Version 4.0.10 has been released, with updated links in the original post. Users of version 4.0.1 or later will receive an automatic update prompt. Users of earlier versions should install over using the EXE file in the release (not the ZIP), but see the warnings in the OP.
This release mainly fixes bugs, some introduced by recent changes to ESI. In addition, moon mining reactions are now better supported, and small skill injectors are shown in the Skill Planner.