Copyskills command not working as it should

So I’ve been testing some Abyssal sites on SISI but now I encountered a problem.
Singularity tells me that my character have more SP then in reality yet it won’t update my last two skills I have finished learning after applying free SP on TQ. It persisted through today’s server save. I would like to move on with my gameplay, but am stuck.

I’m having the same issue.

comes up with no skills to update, yet there are skills i’v trained on tranq that havn’t been copied.