I changed an account from Alpha to Omega last week, did a remap and implanted some chips with the intention of farming the skill points for my main character.
The skill queue is counting down correctly but the skill point count is stuck at just over 5 mill.
try something, pick a new skill, something with like 15 minutes training time for level 1, or around there. Put that in front of your skill que and shut down the game, come back in about 20 minutes, restart, see what happens.