You could reduce the ability to move around the universe by adding a restriction on Jump Clones
It is totally reasonable that a player would want to JC to benefit from +5s or swap implants, but being able to jump around the universe each day is broken I think it’s fair to say.
You could add a “region” timer so that you can’t JC to another region again in 7 days or something. Or maybe just remove JC to different regions altogether to add a bit of logistics back to the game.
Why? You simply state this assumption without arguing it at all.
Since you are only moving your consciousness, not your ship or cargo, logistics has nothing to do with it. How is the game improved if instead one has to fly in a pod and press “Jump” for an hour or more? Especially considering that with few exceptions, you can only jump to a place you’ve already been.
I think a cooldown of a day is perfectly fine. It ensures players can use it daily to decide to play wherever they want in the universe that day, but not multiple times during one play session.